Degrees of freedom
Degrees of freedom (dofs) are distributed by the DofHandler.
Ferrite.DofHandler — TypeDofHandler(grid::Grid)Construct a DofHandler based on the grid grid.
After construction any number of discrete fields can be added to the DofHandler using add!. Construction is finalized by calling close!.
By default fields are added to all elements of the grid. Refer to SubDofHandler for restricting fields to subdomains of the grid.
Examples
dh = DofHandler(grid)
ip_u = Lagrange{RefTriangle, 2}()^2 # vector interpolation for a field u
ip_p = Lagrange{RefTriangle, 1}() # scalar interpolation for a field p
add!(dh, :u, ip_u)
add!(dh, :p, ip_p)
close!(dh)Note that the numbering of degrees of freedom do NOT follow the global numbering of nodes in the associated grid.
Ferrite.SubDofHandler — TypeSubDofHandler(dh::AbstractDofHandler, cellset::AbstractVecOrSet{Int})Create an sdh::SubDofHandler from the parent dh, pertaining to the cells in cellset. This allows you to add fields to parts of the domain, or using different interpolations or cell types (e.g. Triangles and Quadrilaterals). All fields and cell types must be the same in one SubDofHandler.
After construction any number of discrete fields can be added to the SubDofHandler using add!. Construction is finalized by calling close! on the parent dh.
Examples
We assume we have a grid containing "Triangle" and "Quadrilateral" cells, including the cellsets "triangles" and "quadilaterals" for to these cells.
dh = DofHandler(grid)
sdh_tri = SubDofHandler(dh, getcellset(grid, "triangles"))
ip_tri = Lagrange{RefTriangle, 2}()^2 # vector interpolation for a field u
add!(sdh_tri, :u, ip_tri)
sdh_quad = SubDofHandler(dh, getcellset(grid, "quadilaterals"))
ip_quad = Lagrange{RefQuadrilateral, 2}()^2 # vector interpolation for a field u
add!(sdh_quad, :u, ip_quad)
close!(dh) # Finalize by closing the parentAdding fields to the DofHandlers
Ferrite.add! — Methodadd!(dh::DofHandler, name::Symbol, ip::Interpolation)Add a field called name approximated by ip to the DofHandler dh.
The field is added to all cells of the underlying grid, use SubDofHandlers if the grid contains multiple cell types, or to add the field to subset of all the cells.
Ferrite.add! — Methodadd!(sdh::SubDofHandler, name::Symbol, ip::Interpolation)Add a field called name approximated by ip to the SubDofHandler sdh.
Ferrite.close! — Methodclose!(dh::AbstractDofHandler)Closes dh and creates degrees of freedom for each cell.
Dof renumbering
Ferrite.renumber! — Functionrenumber!(dh::AbstractDofHandler, order)
renumber!(dh::AbstractDofHandler, ch::ConstraintHandler, order)Renumber the degrees of freedom in the DofHandler and/or ConstraintHandler according to the ordering order.
order can be given by one of the following options:
- A permutation vector
perm::AbstractVector{Int}such that dofiis renumbered toperm[i]. DofOrder.FieldWise()for renumbering dofs field wise.DofOrder.ComponentWise()for renumbering dofs component wise.DofOrder.Ext{T}for "external" renumber permutations, see documentation forDofOrder.Extfor details.
The dof numbering in the DofHandler and ConstraintHandler must always be consistent. It is therefore necessary to either renumber before creating the ConstraintHandler in the first place, or to renumber the DofHandler and the ConstraintHandler together.
Ferrite.DofOrder.FieldWise — TypeDofOrder.FieldWise()
DofOrder.FieldWise(target_blocks::Vector{Int})Dof order passed to renumber! to renumber global dofs field wise resulting in a globally blocked system.
The default behavior is to group dofs of each field into their own block, with the same order as in the DofHandler. This can be customized by passing a vector of the same length as the total number of fields in the DofHandler (see getfieldnames(dh)) that maps each field to a "target block": to renumber a DofHandler with three fields :u, :v, :w such that dofs for :u and :w end up in the first global block, and dofs for :v in the second global block use DofOrder.FieldWise([1, 2, 1]).
This renumbering is stable such that the original relative ordering of dofs within each target block is maintained.
Ferrite.DofOrder.ComponentWise — TypeDofOrder.ComponentWise()
DofOrder.ComponentWise(target_blocks::Vector{Int})Dof order passed to renumber! to renumber global dofs component wise resulting in a globally blocked system.
The default behavior is to group dofs of each component into their own block, with the same order as in the DofHandler. This can be customized by passing a vector of length ncomponents that maps each component to a "target block" (see DofOrder.FieldWise for details).
This renumbering is stable such that the original relative ordering of dofs within each target block is maintained.
Common methods
Ferrite.ndofs — Functionndofs(dh::AbstractDofHandler)Return the number of degrees of freedom in dh
Ferrite.ndofs_per_cell — Functionndofs_per_cell(dh::AbstractDofHandler[, cell::Int=1])Return the number of degrees of freedom for the cell with index cell.
See also ndofs.
Ferrite.dof_range — Functiondof_range(sdh::SubDofHandler, field_idx::Int)
dof_range(sdh::SubDofHandler, field_name::Symbol)
dof_range(dh:DofHandler, field_name::Symbol)Return the local dof range for a given field. The field can be specified by its name or index, where field_idx represents the index of a field within a SubDofHandler and field_idxs is a tuple of the SubDofHandler-index within the DofHandler and the field_idx.
The dof_range of a field can vary between different SubDofHandlers. Therefore, it is advised to use the field_idxs or refer to a given SubDofHandler directly in case several SubDofHandlers exist. Using the field_name will always refer to the first occurrence of field within the DofHandler.
Example:
julia> grid = generate_grid(Triangle, (3, 3))
Grid{2, Triangle, Float64} with 18 Triangle cells and 16 nodes
julia> dh = DofHandler(grid); add!(dh, :u, 3); add!(dh, :p, 1); close!(dh);
julia> dof_range(dh, :u)
1:9
julia> dof_range(dh, :p)
10:12
julia> dof_range(dh, (1,1)) # field :u
1:9
julia> dof_range(dh.subdofhandlers[1], 2) # field :p
10:12Ferrite.celldofs — Functioncelldofs(dh::AbstractDofHandler, i::Int)Return a vector with the degrees of freedom that belong to cell i.
See also celldofs!.
Ferrite.celldofs! — Functioncelldofs!(global_dofs::Vector{Int}, dh::AbstractDofHandler, i::Int)Store the degrees of freedom that belong to cell i in global_dofs.
See also celldofs.
Grid iterators
Ferrite.CellCache — TypeCellCache(grid::Grid)
CellCache(dh::AbstractDofHandler)Create a cache object with pre-allocated memory for the nodes, coordinates, and dofs of a cell. The cache is updated for a new cell by calling reinit!(cache, cellid) where cellid::Int is the cell id.
Methods with CellCache
reinit!(cc, i): reinitialize the cache for cellicellid(cc): get the cell id of the currently cached cellgetnodes(cc): get the global node ids of the cellgetcoordinates(cc): get the coordinates of the cellcelldofs(cc): get the global dof ids of the cellreinit!(fev, cc): reinitializeCellValuesorFacetValues
See also CellIterator.
Ferrite.CellIterator — TypeCellIterator(grid::Grid, cellset=1:getncells(grid))
CellIterator(dh::AbstractDofHandler, cellset=1:getncells(dh))Create a CellIterator to conveniently iterate over all, or a subset, of the cells in a grid. The elements of the iterator are CellCaches which are properly reinit!ialized. See CellCache for more details.
Looping over a CellIterator, i.e.:
for cc in CellIterator(grid, cellset)
# ...
endis thus simply convenience for the following equivalent snippet:
cc = CellCache(grid)
for idx in cellset
reinit!(cc, idx)
# ...
endCellIterator is stateful and should not be used for things other than for-looping (e.g. broadcasting over, or collecting the iterator may yield unexpected results).
Ferrite.FacetCache — TypeFacetCache(grid::Grid)
FacetCache(dh::AbstractDofHandler)Create a cache object with pre-allocated memory for the nodes, coordinates, and dofs of a cell suitable for looping over facets in a grid. The cache is updated for a new facet by calling reinit!(cache, fi::FacetIndex).
Methods with fc::FacetCache
reinit!(fc, fi): reinitialize the cache for facetfi::FacetIndexcellid(fc): get the current cellidgetnodes(fc): get the global node ids of the cellgetcoordinates(fc): get the coordinates of the cellcelldofs(fc): get the global dof ids of the cellreinit!(fv, fc): reinitializeFacetValues
See also FacetIterator.
Ferrite.FacetIterator — TypeFacetIterator(gridordh::Union{Grid,AbstractDofHandler}, facetset::AbstractVecOrSet{FacetIndex})Create a FacetIterator to conveniently iterate over the faces in facestet. The elements of the iterator are FacetCaches which are properly reinit!ialized. See FacetCache for more details.
Looping over a FacetIterator, i.e.:
for fc in FacetIterator(grid, facetset)
# ...
endis thus simply convenience for the following equivalent snippet: ```julia fc = FacetCache(grid) for faceindex in facetset reinit!(fc, faceindex) # ... end
Ferrite.InterfaceCache — TypeInterfaceCache(grid::Grid)
InterfaceCache(dh::AbstractDofHandler)Create a cache object with pre-allocated memory for the nodes, coordinates, and dofs of an interface. The cache is updated for a new cell by calling reinit!(cache, facet_a, facet_b) where facet_a::FacetIndex and facet_b::FacetIndex are the two interface facets.
Struct fields of InterfaceCache
ic.a :: FacetCache: facet cache for the first facet of the interfaceic.b :: FacetCache: facet cache for the second facet of the interfaceic.dofs :: Vector{Int}: global dof ids for the interface (union ofic.a.dofsandic.b.dofs)
Methods with InterfaceCache
reinit!(cache::InterfaceCache, facet_a::FacetIndex, facet_b::FacetIndex): reinitialize the cache for a new interfaceinterfacedofs(ic): get the global dof ids of the interface
See also InterfaceIterator.
Ferrite.InterfaceIterator — TypeInterfaceIterator(grid::Grid, [topology::ExclusiveTopology])
InterfaceIterator(dh::AbstractDofHandler, [topology::ExclusiveTopology])Create an InterfaceIterator to conveniently iterate over all the interfaces in a grid. The elements of the iterator are InterfaceCaches which are properly reinit!ialized. See InterfaceCache for more details. Looping over an InterfaceIterator, i.e.:
for ic in InterfaceIterator(grid, topology)
# ...
endis thus simply convenience for the following equivalent snippet for grids of dimensions > 1:
ic = InterfaceCache(grid)
neighborhood = Ferrite.get_facet_facet_neighborhood(topology, grid)
for facet in facetskeleton(topology, grid)
neighbors = neighborhood[facet[1], facet[2]]
isempty(neighbors) && continue
neighbor_facet = neighbors[1]
reinit!(ic, facet, neighbor_facet)
# ...
endInterfaceIterator is stateful and should not be used for things other than for-looping (e.g. broadcasting over, or collecting the iterator may yield unexpected results).